You can wire the alternator output directly from the output stud to a fuse holder mounted on the engine or inline the wire, and from the other end of the fuse to the hot side of the start relay, since it connects back to the battery with a heavy wire. #6 wire is rated for 102 Amps, so an 80 Amp fuse is probably appropriate ( see
http://web.me.com/dougmr...Website/Wire_Sizes.html ) and the wire should be orange ( see
http://web.me.com/dougmr...ebsite/Color_Codes.html ).
Be sure to wire from the alternator frame (there is usually a threaded stud connected to the frame) to the engine block, preferably where the negative wire from the battery connects, with the same size wire in yellow. You should not trust the connection provided by the mounting brackets, at least around salt water.
I don't think this adds anything to what rv said but it does have more words.
There is an issue with the battery switch. If you wire directly to the battery, no problem. If you wire to the solenoid hot side and you have a battery switch between it and the battery, then a conventional alternator can produce voltage spikes if the battery switch is opened. The one-wire units really don't have this problem, since they regulate themselves, but it is still a good idea to leave the battery switch closed when the engine is running.
I am working on a generic schematic for this and will post it soon. I know I like to work with schematics, my mind works that way.....
1975 32' Flybridge Sedan, twin Perkins 6-354 diesels, 1:1.53 velvetdrives, 16 X 19 props. Merritt Island, Florida