I have 1985 318's and my system has the "middle canister fuel filter" installed with the Perko water seperators on the aft frame supports.
The Perko water seperator bowls only filter big stuff and water. The inline fuel filter (canister) gets the small junk out of the fuel but does not remove water.
Not sure why your '88 doesn't have an inline filter. Maybe they improved the Perko filter to do both water and filter small microns. The guys with later models than mine (1985) will have to chime in.
Many people have modified from the hard fuel line to the flex fuel line to prevent cracks in the rigid tubing. If you do it, get a flex line that will fit from the pump to the carb so you don't have to worry about barbless cut tubing (unsafe). (Hot subject...sorry

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1985 Marinette 29 Sedan bridge
Twin 318s, 660 hours
New Edelbrock 1409 carbs (working like a charm)
Original Electronic Ignition, Blaster 2 coils, 90 deg plug wire universal kit cut to fit
Raw water system
Freshwater always
Located Pickwick Lake, TN,MS,AL
RETRO BOATS ARE COOL
If the guys on this forum take their time to help you, have the courtesy to update your thread with the resolution.